EVOLTREE

EVOLution of TREEs as drivers
of terrestrial biodiversity

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Libraries and Sequences Database

Sequence

An infrastructure for the tracking and processing of libraries and sequences produced by the Centre National de Sequencage (CNS) has been set up. The data of the CBiB Library Database and the CBiB Sequence Analysis Interface have been transferred to the eLab.

Sequence

An infrastructure for the tracking and processing of libraries and sequences produced by the Centre National de Sequencage (CNS) has been set up. The data of the CBiB Library Database and the CBiB Sequence Analysis Interface have been transferred to the eLab.

Description

Sequences produced by the CNS were automatically collected and processed on the CBiB server. The processing of the sequences covered: clustering of ESTs, the detection of SNPs and SSRs, and the semi-automatic annotation of ESTs and clusters.

Available Data

SpeciesLibraryTissueSequences
Abies albacDNA libraryNeedles4,591
Fagus sylvaticacDNA librarybud39,213
Fagus sylvaticacDNA librarydormant buds30,107
Fagus sylvaticaChloroplast genome libraryleaves914
Fraxinus excelsiorcDNA librarybuds27,998
Lymantria disparcDNA libraryGut & Rest of Body18,508
Lymantria monachacDNA libraryGut & Rest of Body16,695
Picea abiesGene enriched genomic libraryNeedle3,028
Picea abiesGene enriched genomic librarySeed3,035
Picea abiesGenomic librarywhole seedling4,288
Pinus pinasterChloroplast genome libraryneedles2,219
Pinus pinasterGenomic libraryneedles8,344
Pinus pinasterSSH libraryDifferentiating xylem8,948
Pinus pinasterSSH libraryDifferentiting xylem2,229
Pinus sylvestriscDNA libraryneedles9,059
Pinus sylvestriscDNA libraryYoung Needles18,095
Podocarpus oleifoliusSSR enriched libraryneedles1,809
Prunus aviumcDNA libraryleaf bud11,904
Quercus petraeacDNA libraryxylem8,689
Quercus petraeacDNA libraryleaf24,023
Quercus petraeacDNA librarybud9,804
Quercus petraeacDNA libraryroots28,494
Quercus petraeaSSH libraryroots3,501
Quercus roburBAC library for BAC end sequencingleaves14,974
Quercus roburcDNA librarybud33,877
Quercus roburcDNA libraryroots8,859
Quercus roburcDNA librarybuds19,048
Quercus roburChloroplast genome libraryleaves2,138
Quercus roburGene enriched genomic libraryEtiolated leaf9,054
Quercus roburGenomic libraryleaves13,416
Quercus roburSSH libraryroots4,403
Quercus roburSSH libraryleaves3,575
Quercus subercDNA librarydeveloping phellem4,992
Tortrix viridanacDNA librarymidgut18,174

Funding Initiatives

Funding is available for EVOLTREE members: training expense reimbursement, conference grants and project grants

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eLab Services

The eLab provides a search interface which can browse over all databases currently available within the EVOLTREE project.

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Events

Scientific events of interest to the EVOLTREE community are listed here. Conference grants are available to cover expenses

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Training

EVOLTREE organises different training courses on different topics. Financial support is available for participants from EVOLTREE partner organisations.

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